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Quantitative Genomic DNA from Treponema denticola strain a

35405DQ

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Quantitative genomic DNA isolated from Treponema denticola strain a can be used for assay development, verification, and validation as well as monitoring of day-to-day test variation and lot-to-lot performance of molecular-based assays. The quantitative format allows for the generation of a standard curve for quantitative PCR (qPCR) to determine bacterial load.
Product category
Bacteria
Product type
Nucleic acid
Molecular standard
Derived from
Treponema denticola a [CIP 103919, DSM 14222] (ATCC 35405)
Organism
Treponema denticola (ex Flügge) Chan et al.
Type strain
Yes
Genome sequenced strain
Yes
Applications
Assay development
Bioinformatics
Next-generation sequencing
Specification range
≥1 x 105 copies/μL
Volume
100 μL
Product format
Frozen
Storage conditions
-20°C or colder
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Documentation

ATCC determines the biosafety level of a material based on our risk assessment as guided by the current edition of Biosafety in Microbiological and Biomedical Laboratories (BMBL), U.S. Department of Health and Human Services. It is your responsibility to understand the hazards associated with the material per your organization’s policies and procedures as well as any other applicable regulations as enforced by your local or national agencies.

Required Products

These products are vital for the proper use of this item and have been confirmed as effective in supporting functionality. If you use alternative products, the quality and effectiveness of the item may be affected.

Detailed product information

General

Specific applications
ATCC® Genuine Nucleics can be used for assay development, verification, validation, monitoring of day-to-day test variation, and lot-to-lot performance of molecular-based assays. The quantitative format allows for the generation of a standard curve for quantitative PCR (qPCR) to determine bacterial load.

Characteristics

Serotype
a
Comments
Genomic DNA isolated from a preparation of Treponema denticola strain a (ATCC® 35405™). The source organism is also available through the ATCC catalog.

Handling information

Handling procedure
  1. Thaw the vial at room temperature and immediately place on ice. Avoid exposing the DNA to repeated freeze-thaw cycles as it may result in degradation.
  2. Gently mix the sample to ensure an even distribution of material.
  3. Briefly centrifuge the tube before opening to ensure all liquid is at the bottom.
Handling notes
Aliquoting is highly recommended to avoid multiple freeze-thaws.

Quality control specifications

Verification method
Whole-genome Sequencing

History

Depositors
ATCC
Cross references
GenBank U33210 dmcA
GenBank L36851 Treponema denticola fliG gene, complete cds.
GenBank L25421 Treponema denticola phosphatase gene, 5' end.
GenBank AF082511 Treponema denticola mgl operon, partial sequence.
GenBank U29399 Treponema denticola major outer sheath protein (msp) gene, complete cds.
GenBank L25603 Treponema denticola (ATCC 35405) chymotrypsin-like protease gene, complete cds.
GenBank U84257 Treponema denticola methyl-accepting chemotaxis protein B (dmcB) gene, partial cds.
GenBank AF012922 Treponema denticola methyl-accepting chemotaxis protein (mcpA) gene, complete cds.
GenBank AF042861 Treponema denticola OppA (oppA), putative OppB (oppB), putative OppC (oppC), putative OppD (oppD), and putative OppF (oppF) genes, complete cds.
GenBank AF232219 Treponema denticola putative alcohol dehydrogenase, FliQ (fliQ), FliR (fliR), and FlhB (flhB) genes, complete cds; and FlhA (flhA) gene, partial cds.
GenBank U78776 Treponema denticola gufa gene, partial cds, putative flagellar operon flgB, flgC, fliE, fliF, fliG, fliH, fliI and fliJ genes, complete cds, and fdgA gene, partial cds.
GenBank AF122909 Treponema denticola Tap1 (tap1), flagellar hook assembly scaffolding protein FlgD (flgD), flagellar hook protein FlgE (flgE), flagellar motor protein MotA (motA), flagellar motor protein MotB (motB), FliL (fliL), flagellar switch protein FliM
GenBank AF139203 Treponema denticola strain ATCC 35405 16S ribosomal RNA gene, partial sequence
GenBank AE017226 Treponema denticola ATCC 35405, complete genome.

Legal disclaimers

Intended use
This product is intended for laboratory research use only. It is not intended for any animal or human therapeutic use, any human or animal consumption, or any diagnostic use.
Warranty

The product is provided 'AS IS' and the viability of ATCC® products is warranted for 30 days from the date of shipment, provided that the customer has stored and handled the product according to the information included on the product information sheet, website, and Certificate of Analysis. For living cultures, ATCC lists the media formulation and reagents that have been found to be effective for the product. While other unspecified media and reagents may also produce satisfactory results, a change in the ATCC and/or depositor-recommended protocols may affect the recovery, growth, and/or function of the product. If an alternative medium formulation or reagent is used, the ATCC warranty for viability is no longer valid.  Except as expressly set forth herein, no other warranties of any kind are provided, express or implied, including, but not limited to, any implied warranties of merchantability, fitness for a particular purpose, manufacture according to cGMP standards, typicality, safety, accuracy, and/or noninfringement.

Disclaimers

This product is intended for laboratory research use only. It is not intended for any animal or human therapeutic use, any human or animal consumption, or any diagnostic use. Any proposed commercial use is prohibited without a license from ATCC.

While ATCC uses reasonable efforts to include accurate and up-to-date information on this product sheet, ATCC makes no warranties or representations as to its accuracy. Citations from scientific literature and patents are provided for informational purposes only. ATCC does not warrant that such information has been confirmed to be accurate or complete and the customer bears the sole responsibility of confirming the accuracy and completeness of any such information.

This product is sent on the condition that the customer is responsible for and assumes all risk and responsibility in connection with the receipt, handling, storage, disposal, and use of the ATCC product including without limitation taking all appropriate safety and handling precautions to minimize health or environmental risk. As a condition of receiving the material, the customer agrees that any activity undertaken with the ATCC product and any progeny or modifications will be conducted in compliance with all applicable laws, regulations, and guidelines. This product is provided 'AS IS' with no representations or warranties whatsoever except as expressly set forth herein and in no event shall ATCC, its parents, subsidiaries, directors, officers, agents, employees, assigns, successors, and affiliates be liable for indirect, special, incidental, or consequential damages of any kind in connection with or arising out of the customer's use of the product. While reasonable effort is made to ensure authenticity and reliability of materials on deposit, ATCC is not liable for damages arising from the misidentification or misrepresentation of such materials.

Please see the material transfer agreement (MTA) for further details regarding the use of this product. The MTA is available at www.atcc.org.

Permits & Restrictions

Import Permit for the State of Hawaii

If shipping to the U.S. state of Hawaii, you must provide either an import permit or documentation stating that an import permit is not required. We cannot ship this item until we receive this documentation. Contact the Hawaii Department of Agriculture (HDOA), Plant Industry Division, Plant Quarantine Branch to determine if an import permit is required.

MORE INFORMATION ABOUT PERMITS AND RESTRICTIONS

Frequently Asked Questions

References

Curated Citations

Makinen KK, et al. Dominance of iminopeptidase activity in the human oral bacterium Treponema denticola ATCC 35405. Curr. Microbiol. 14: 341-346, 1987.

Makinen KK, et al. Benzoylarginine peptidase and iminopeptidase profiles of Treponema denticola strains isolated from the human periodontal pocket. Curr. Microbiol. 14: 85-89, 1986.

Makinen KK, et al. Proline iminopeptidase from the outer cell envelope of the human oral spirochete Treponema denticola ATCC 35405. Infect. Immun. 64: 702-708, 1996. PubMed: 8641769

Chan EC, et al. Treponema denticola (ex Brumpt 1925) sp. nov., nom. rev., and identification of new spirochete isolates from periodontal pockets. Int. J. Syst. Bacteriol. 43: 196-203, 1993. PubMed: 8494734

Cheng SL, et al. Comparative study of six random oral spirochete isolates. Serological heterogeneity of Treponema denticola. J. Periodontal Res. 20: 602-612, 1985. PubMed: 2935615

View All Curated Citations for this Product

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