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Geobacter bemidjiensis Nevin et al.

BAA-1014

Product category
Bacteria
Product type
Extremophile
Strain designation
Bem [DSM 16622, JCM 12645]
Type strain
Yes
Isolation source
Enriched subsurface sediments; isolated by K Nevin
Geographical isolation
United States; Minnesota; Bemidji
Product format
Frozen
Storage conditions
-80°C or colder
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Documentation

ATCC determines the biosafety level of a material based on our risk assessment as guided by the current edition of Biosafety in Microbiological and Biomedical Laboratories (BMBL), U.S. Department of Health and Human Services. It is your responsibility to understand the hazards associated with the material per your organization’s policies and procedures as well as any other applicable regulations as enforced by your local or national agencies.

ATCC highly recommends that appropriate personal protective equipment is always used when handling vials. For cultures that require storage in liquid nitrogen, it is important to note that some vials may leak when submersed in liquid nitrogen and will slowly fill with liquid nitrogen. Upon thawing, the conversion of the liquid nitrogen back to its gas phase may result in the vial exploding or blowing off its cap with dangerous force creating flying debris. Unless necessary, ATCC recommends that these cultures be stored in the vapor phase of liquid nitrogen rather than submersed in liquid nitrogen.

Detailed product information

General

Specific applications
Reduces iron (ferric, FeIII) ferric iron
Preceptrol
No

Characteristics

Extremophile type
Metallotolerant

Handling information

Medium
Temperature
30°C
Atmosphere
80% N2, 20% CO2
Handling procedure
  1. Sterilize the top of the Balch tube by spraying it with 70% ethanol and then flaming.
  2. If needed exchange the gas in the test tube for 80% N2-20% CO2.
  3. When the Balch tube is ready to inoculate, thaw the frozen vial at room temperature under a gentle stream of oxygen-free gas.
  4. For inoculation, use an anaerobic (see "d" below) 1.0 ml syringe tipped with 22-gauge needle, withdraw the cell suspension from the vial and transfer it to the broth.  Plate 0.1 ml of the inoculated culture onto a non-selective medium and incubate aerobically at 30oC.  Use 0.1 ml of the inoculated culture to inoculate a nonselective aerobic broth and an additional tube of #1768 broth. Incubate the non-selective aerobic broth tubes at 30oC.  Incubate the anaerobic tube at 30oC.
  5. Growth should be detected in the #1768 broth within 5 to 7 days.  There should be no growth detected on the aerobic plate or in the aerobic broth.

ANAEROBIC CONDITIONS:

  1. Balch tubes (available from Bellco Glass, Vineland, NJ) are specially designed for anaerobic work and use an aluminum crimp cap to hold a rubber stopper in place. Needles can easily be inserted through the stopper. Alternatively, screw cap tubes with butyl rubber stoppers can be used. In the latter case, the stopper may be removed and the tube placed under a cannula system that dispenses sterile, oxygen-free gas for addition of reducing agents or inoculation.
  2. Resazurin is a commonly used redox indicator that is pink when the redox potential is above -50 mv, and colorless when the redox potential is below -110 mv (i.e. highly reducing). Most strict anaerobes require this low redox potential for optimum growth.
  3. To obtain a fully reduced medium, the medium must be anoxic and a reducing agent must be added. Common reducing agents are sodium sulfide, cysteine, dithiothreitol, titanium citrate and Co-enzyme M (mercaptoethanesulfonic acid). For this culture, Co-enzyme M or Cysteine is the agent of choice.
  4. Syringes can be made anaerobic by one of two methods.
    1. Displace the dead space in the syringe with a sterile oxygen-free gas.
    2. Displace the dead space in the syringe with a reducing agent.


Handling notes

Cells are Gram-negative non-motile rods. Medium changes from golden brown to green when growth occurs. 

Additional information on this culture is available on the ATCC web site www.atcc.org.

History

Deposited as
Geobacter bemidjiensis Nevin et al.
Depositors
KP Nevin
Type of isolate
Environmental
Year of origin
1998
Special collection
NSF - Bacteriology
Cross references
GenBank AY547335 Geobacter bemidjiensis gyrase B (gyrB) gene, partial cds
GenBank AY188890 Geobacter bemidjiensis FusA-like (fusA) gene, partial sequence
GenBank AY187307 Geobacter bemidjiensis 16S ribosomal RNA gene, partial sequence
GenBank AY186994 Geobacter grbiciae strain TACPZ gyrase B (gyrB) gene, partial cds
GenBank AY186914 Geobacter bemidjiensis RNA polymerase beta subunit (rpoB) gene, partial cds
GenBank AY186883 Geobacter bemidjiensis recA pseudogene, partial sequence

Legal disclaimers

Intended use
This product is intended for laboratory research use only. It is not intended for any animal or human therapeutic use, any human or animal consumption, or any diagnostic use.
Warranty

The product is provided 'AS IS' and the viability of ATCC® products is warranted for 30 days from the date of shipment, provided that the customer has stored and handled the product according to the information included on the product information sheet, website, and Certificate of Analysis. For living cultures, ATCC lists the media formulation and reagents that have been found to be effective for the product. While other unspecified media and reagents may also produce satisfactory results, a change in the ATCC and/or depositor-recommended protocols may affect the recovery, growth, and/or function of the product. If an alternative medium formulation or reagent is used, the ATCC warranty for viability is no longer valid.  Except as expressly set forth herein, no other warranties of any kind are provided, express or implied, including, but not limited to, any implied warranties of merchantability, fitness for a particular purpose, manufacture according to cGMP standards, typicality, safety, accuracy, and/or noninfringement.

Disclaimers

This product is intended for laboratory research use only. It is not intended for any animal or human therapeutic use, any human or animal consumption, or any diagnostic use. Any proposed commercial use is prohibited without a license from ATCC.

While ATCC uses reasonable efforts to include accurate and up-to-date information on this product sheet, ATCC makes no warranties or representations as to its accuracy. Citations from scientific literature and patents are provided for informational purposes only. ATCC does not warrant that such information has been confirmed to be accurate or complete and the customer bears the sole responsibility of confirming the accuracy and completeness of any such information.

This product is sent on the condition that the customer is responsible for and assumes all risk and responsibility in connection with the receipt, handling, storage, disposal, and use of the ATCC product including without limitation taking all appropriate safety and handling precautions to minimize health or environmental risk. As a condition of receiving the material, the customer agrees that any activity undertaken with the ATCC product and any progeny or modifications will be conducted in compliance with all applicable laws, regulations, and guidelines. This product is provided 'AS IS' with no representations or warranties whatsoever except as expressly set forth herein and in no event shall ATCC, its parents, subsidiaries, directors, officers, agents, employees, assigns, successors, and affiliates be liable for indirect, special, incidental, or consequential damages of any kind in connection with or arising out of the customer's use of the product. While reasonable effort is made to ensure authenticity and reliability of materials on deposit, ATCC is not liable for damages arising from the misidentification or misrepresentation of such materials.

Please see the material transfer agreement (MTA) for further details regarding the use of this product. The MTA is available at www.atcc.org.

Permits & Restrictions

Import Permit for the State of Hawaii

If shipping to the U.S. state of Hawaii, you must provide either an import permit or documentation stating that an import permit is not required. We cannot ship this item until we receive this documentation. Contact the Hawaii Department of Agriculture (HDOA), Plant Industry Division, Plant Quarantine Branch to determine if an import permit is required.

MORE INFORMATION ABOUT PERMITS AND RESTRICTIONS

Frequently Asked Questions

References

Curated Citations

enriched subsurface sediments from aquifer in Bemidji, MN

Nevin KP, Lovley DR. Potential for nonenzymatic reduction of Fe(III) via electron shuttling in subsurface sediments. Environ. Sci. Technol. 34: 2472-2478, 2000.

Snoeyenbos-West OL, et al. Enrichment of Geobacter Species in Response to Stimulation of Fe(III) Reduction in Sandy Aquifer Sediments. Microb. Ecol. 39: 153, 2000. PubMed: 10833228

Holmes DE, et al. Comparison of 16S rRNA, nifD, recA, gyrB, rpoB and fusA genes within the family Geobacteraceae fam. nov.. Int. J. Syst. Evol. Microbiol. 54: 1591-1599, 2004. PubMed: 15388715

Nevin KP, et al. Geobacter bemidjiensis sp. nov. and Geobacter psychrophilus sp. nov., two novel Fe(III)-reducing subsurface isolates. Int. J. Syst. Evol. Microbiol. 55: 1667-1674, 2005. PubMed: 16014499

View All Curated Citations for this Product

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