2024 ASM Conference on Rapid Applied Microbial Next-Generation Sequencing and Bioinformatic Pipelines (ASM NGS)
Hyatt Regency, Washington, DC
October 13, 2024 - October 16, 2024ATCC attended ASM NGS 2024 to showcase our standardized sequencing, assembly, and annotation pipeline for producing authenticated reference-quality genomes traceable to the microorganisms in our collection. Check out our poster presentation from the event and explore our resources below to learn about our workflows and to get the details on how to access our reference-quality data through the ATCC Genome Portal.
Would you like to speak to our sequencing and bioinformatics team about our data? Contact us so we can discuss your needs.
Check out our poster
Building a Sequence Repository
Presenter: Nikhita Puthuveetil, MS, Senior Bioinformatician, ATCC
Date: Tuesday, October 15, 2024
Time: 2:45 PM - 5:15 PM
Abstract Number: 45450
Poster Number: PIP-TUES-131
Discover the ATCC Genome Portal
The ATCC Genome Portal is a rapidly growing ISO 9001–compliant database of high-quality reference genomes from authenticated microbial strains in the ATCC collection. Through this cloud-based platform, you can easily access and download meticulously curated whole-genome sequences. By becoming a Supporting Member of the ATCC Genome Portal, you can experience all the benefits the portal has to offer in addition to exclusive access to our premium features.
- Access and download meticulously curated whole-genome sequences from your browser or our secure API.
- Search for nucleotide sequences or genes within genomes.
- View genome assembly metadata and quality metrics.
- Identify the relatedness of published genomes by total genome alignment.
- Use our Discrepancy Reports to align your sequencing data with our reference-quality genomes to evaluate SNPs, indels, deletions, and other genetic differences.
Check out our featured resources
ATCC Genome Portal - Setting New Standards for Authentication
The ATCC Genome Portal is a rapidly growing ISO 9001–compliant database of high-quality reference genomes from authenticated microbial strains in the ATCC collection.
MoreThe ATCC Genome Portal: Authenticated Microbial Reference Genomes
This is a poster presented at ASM Microbe 2024 that showcases our latest updates to the ATCC Genome Portal.
MoreDoes Long-Read Sequencing Technology Produce Superior Viral Genome Assemblies?
This is a poster presented at ASM Microbe 2024 that showcases our efforts toward optimizing viral genome assemblies.
MoreRAISIN: A Pipeline Intended to Better Characterize Variants on the Amino Acid Level
This is a presentation from ASM Microbe 2024 that showcases RAISIN—a simple, fast, and accurate variant annotation pipeline.
MoreEnhancing Research Reproducibility with Biomaterials Characterized by NGS
Learn how ATCC is addressing the inherent issues with public data via next-generation sequencing.
MoreTaxonomic Classification Can Sometimes be a Strain
Discover how the ATCC Genome Portal provides the only authenticated reference genome database for ATCC microbes.
More
Technical document
The ATCC Genome Portal: Our Approach to Whole-genome Sequencing
Discover the features of the ATCC Genome Portal and understand the DNA extraction, sequencing, and bioinformatic methods we use to produce high-quality, reference-grade genomes.
MoreDiscover ATCC's Transcriptomics Data
Learn more about our standardized workflow for producing transcriptomics data from the authenticated cell lines within our collection.
More
Webinar
NGS Further Authenticates ATCC Materials
This webinar discusses the reference-quality microbial genomes with corresponding metadata that are now publicly available to the scientific community on the ATCC Genome Portal (genomes.atcc.org).
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