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Mycolicibacter nativiensis

TSD-299

Mycolicibacter nativiensis strain MYC340 is a bacterial type strain that was isolated from a water sample from the sewage treatment station of São Paulo Zoological Park Foundation (FPZSP), Brazil. This strain grows in solid Middlebrook 7H10 medium and on Löwenstein–Jensen medium, and growth is observed in seven days at 30°C and 37°C.
Product category
Bacteria
Strain designation
MYC340
Type strain
Yes
Isolation source
Water sample from the sewage treatment station
Geographical isolation
Brazil; Sao Paulo
Product format
Frozen
Storage conditions
-80°C or colder
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Documentation

ATCC determines the biosafety level of a material based on our risk assessment as guided by the current edition of Biosafety in Microbiological and Biomedical Laboratories (BMBL), U.S. Department of Health and Human Services. It is your responsibility to understand the hazards associated with the material per your organization’s policies and procedures as well as any other applicable regulations as enforced by your local or national agencies.

ATCC highly recommends that appropriate personal protective equipment is always used when handling vials. For cultures that require storage in liquid nitrogen, it is important to note that some vials may leak when submersed in liquid nitrogen and will slowly fill with liquid nitrogen. Upon thawing, the conversion of the liquid nitrogen back to its gas phase may result in the vial exploding or blowing off its cap with dangerous force creating flying debris. Unless necessary, ATCC recommends that these cultures be stored in the vapor phase of liquid nitrogen rather than submersed in liquid nitrogen.

Detailed product information

General

Preceptrol
No

Characteristics

Comments

Growth in solid Middlebrook 7H10 medium and on Löwenstein–Jensen medium was observed in seven days at 30°C and 37°C, giving rise to non-chromogenic, shiny, smooth colonies with defined edges and creamy consistency. It shows growth in TCH, but not in NaCl nor in MacConkey. Positive for Tween 80 hydrolysis, catalase and urease production, and nitrate and tellurite reduction, while negative for iron uptake. It is susceptible to amikacin, ciprofloxacin, clarithromycin, sulfamethoxazole-trimethoprim and moxifloxacin, but resistant to ethambutol, rifampicin, isoniazid, doxycycline, and streptomycin. The genome draft and sequence of the 16S rRNA gene of MYC340 are annotated in GenBank under accession CP083956 and MK890521.1, respectively. The type strain is MYC340 (= INCQS P7260 = JCM 35368). Additional genotypes: rpoB and hsp65 gene, MK879905.1 and MK877167.1 respectively.

Type strain description
This culture provided to the ATCC type strain depository is neither produced nor characterized by ATCC. No technical information is available on this material. Refer to depositor for technical information on this strain.
Technical information
ATCC Technical Services does not have technical information on type strain deposits that are not fully characterized. Additional information can be found in the depositor’s publication.

Handling information

Temperature
30°C
Atmosphere
Aerobic
Incubation
Seven days
Depositor-recommended growth conditions

Depositor recommends growth on Middlebrook 7H10 medium supplemented with 0.5% glycerol and 10% OADC-oleic acid, albumin, dextrose and catalase (Becton Dickinson). 

Strain was cultivated in solid medium to observe macroscopic characteristics of individual colonies which were compatible with a single profile. Analysis of the gene sequences (rpoB, hsp65 and 16S) showed no contamination. To verify possible genomic contamination, we used Kraken2 v2.0.8_beta with the database ftp://ftp.ccb.jhu.edu/pub/data/kraken2_dbs/minikraken_8GB_202003.tgz. 

History

Depositors
C Viana-Niero, The Federal University of São Paulo (UNIFESP)
Type of isolate
Wastewater
Year of origin
2012
Cross references
GenBank MK890521.1 Mycolicibacter sp. strain MYC340 16S ribosomal RNA gene, partial sequence
GenBank CP083986.1 Mycolicibacter sp. MYC340 chromosome
GenBank MK879905.1 Mycolicibacter sp. strain MYC340 RpoB gene, partial cds
GenBank MK877167.1 Mycolicibacter sp. strain MYC340 Hsp65 gene, partial cds

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Intended use
This product is intended for laboratory research use only. It is not intended for any animal or human therapeutic use, any human or animal consumption, or any diagnostic use.
Warranty

The product is provided 'AS IS' and the viability of ATCC® products is warranted for 30 days from the date of shipment, provided that the customer has stored and handled the product according to the information included on the product information sheet, website, and Certificate of Analysis. For living cultures, ATCC lists the media formulation and reagents that have been found to be effective for the product. While other unspecified media and reagents may also produce satisfactory results, a change in the ATCC and/or depositor-recommended protocols may affect the recovery, growth, and/or function of the product. If an alternative medium formulation or reagent is used, the ATCC warranty for viability is no longer valid.  Except as expressly set forth herein, no other warranties of any kind are provided, express or implied, including, but not limited to, any implied warranties of merchantability, fitness for a particular purpose, manufacture according to cGMP standards, typicality, safety, accuracy, and/or noninfringement.

Disclaimers

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Please see the material transfer agreement (MTA) for further details regarding the use of this product. The MTA is available at www.atcc.org.

Disclosures

ATCC is a private, nonprofit biological resource center (BRC) and research organization that holds deposits of new type strains. ATCC tests for viability and identity upon the initial deposit of type strains. For those strains with a “TSD” designation, no further testing is performed and these strains are made available on behalf of the depositor per the requirements of the International Journal of Systematic and Evolutionary Microbiology (IJSEM), published by the Society for General Microbiology (SGM), and the International Committee on Systematics of Prokaryotes (ICSP).

ATCC may fully accessions new type strains into its general culture collection. At that time, ATCC will provide an “ATCC” designation to the strain, fully characterize the strain, and provide a Certificate of Analysis with authentication data for that specific item.

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Frequently Asked Questions

References

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