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Dehalococcoides sp.

BAA-2100

Product category
Bacteria
Product type
Extremophile
Strain designation
BAV1
Type strain
No
Genome sequenced strain
Yes
Isolation source
Chloroethene contaminated sediment
Geographical isolation
United States; Michigan; Oscoda
Product format
Frozen
Storage conditions
-80°C or colder
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Documentation

ATCC determines the biosafety level of a material based on our risk assessment as guided by the current edition of Biosafety in Microbiological and Biomedical Laboratories (BMBL), U.S. Department of Health and Human Services. It is your responsibility to understand the hazards associated with the material per your organization’s policies and procedures as well as any other applicable regulations as enforced by your local or national agencies.

ATCC highly recommends that appropriate personal protective equipment is always used when handling vials. For cultures that require storage in liquid nitrogen, it is important to note that some vials may leak when submersed in liquid nitrogen and will slowly fill with liquid nitrogen. Upon thawing, the conversion of the liquid nitrogen back to its gas phase may result in the vial exploding or blowing off its cap with dangerous force creating flying debris. Unless necessary, ATCC recommends that these cultures be stored in the vapor phase of liquid nitrogen rather than submersed in liquid nitrogen.

Detailed product information

General

Preceptrol
No

Characteristics

Comments
Genome sequenced strain
Growth can best be monitored using real time PCR; see Protocol for quantifying in Related Links.

Handling information

Medium
Temperature
30°C
Atmosphere
90% N2, 10% CO2
Handling procedure
  1. Prepare media in Balch tubes, with 20 mL of media allowing for 20% headspace in the tube. Add 5 uL cis-1,2-dichloroethene (cis-DCE) to each Balch tube.
  2. Pre-reduce all media and supplies 24 hours in advance of opening vial and/or culturing using 3% cysteine and 80% N2-10%CO2-10% H2 gas.
  3. Open thawed vial according to enclosed instructions or visit www.atcc.org for instructions. It is highly recommended that all work be performed in an anaerobic chamber.
  4. Under anaerobic conditions, aseptically transfer the entire contents of the vial to a tube of #2760 broth prepared as described above. Establish growth in this primary tube before subculturing. Several drops from the primary broth tube can be sued to inoculate a #260 plate to check purity.
  5. Incubate in an anaerobic atmosphere at 30°C for 2-4 weeks. Incubate one agar plate aerobically at 37°C to check for contamination.
  6. Once growth has been established, additional test tubes can be inoculated by transferring 1 mL from the primary broth tube to secondary broth tubes. Best practice dictates the use of pre-reduced media.


Anaerobic conditions for incubation may be obtained by any of the following: 
Loose screw caps on test tubes in anaerobic chamber, 
Loose screw caps on test tubes in an activated anaerobic gas pack jar, or 
Use of sterile butyl rubber stoppers on test tubes so that an anaerobic gas headspace is retained.

Handling notes
This culture is a strict anaerobe and all efforts should be made to maintain anaerobic conditions.  It is strongly suggested that all transfers be performed in an anaerobic chamber (bug box).  Growth can best be monitored using real time PCR; see attached protocol. Growth can also be monitored using a fluorescent DNA stain such as LIVE/DEAD BacLight or SYBR green.

This strain should be provided with the chloronated electron acceptor cis-DCE every 2-4 weeks.

Additional information on this culture is available on the ATCC® web site at www.atcc.org.

History

Deposited as
Dehalococcoides sp.
Depositors
FE Löffler
Chain of custody
ATCC <-- F Loeffler <-- J He
Type of isolate
Environmental
Cross references
GenBank AY165308 Dehalococcoides sp. BAV1 16S ribosomal RNA gene, partial sequence.
GenBank CP000688 Dehalococcoides sp. BAV1, complete genome

Legal disclaimers

Intended use
This product is intended for laboratory research use only. It is not intended for any animal or human therapeutic use, any human or animal consumption, or any diagnostic use.
Warranty

The product is provided 'AS IS' and the viability of ATCC® products is warranted for 30 days from the date of shipment, provided that the customer has stored and handled the product according to the information included on the product information sheet, website, and Certificate of Analysis. For living cultures, ATCC lists the media formulation and reagents that have been found to be effective for the product. While other unspecified media and reagents may also produce satisfactory results, a change in the ATCC and/or depositor-recommended protocols may affect the recovery, growth, and/or function of the product. If an alternative medium formulation or reagent is used, the ATCC warranty for viability is no longer valid.  Except as expressly set forth herein, no other warranties of any kind are provided, express or implied, including, but not limited to, any implied warranties of merchantability, fitness for a particular purpose, manufacture according to cGMP standards, typicality, safety, accuracy, and/or noninfringement.

Disclaimers

This product is intended for laboratory research use only. It is not intended for any animal or human therapeutic use, any human or animal consumption, or any diagnostic use. Any proposed commercial use is prohibited without a license from ATCC.

While ATCC uses reasonable efforts to include accurate and up-to-date information on this product sheet, ATCC makes no warranties or representations as to its accuracy. Citations from scientific literature and patents are provided for informational purposes only. ATCC does not warrant that such information has been confirmed to be accurate or complete and the customer bears the sole responsibility of confirming the accuracy and completeness of any such information.

This product is sent on the condition that the customer is responsible for and assumes all risk and responsibility in connection with the receipt, handling, storage, disposal, and use of the ATCC product including without limitation taking all appropriate safety and handling precautions to minimize health or environmental risk. As a condition of receiving the material, the customer agrees that any activity undertaken with the ATCC product and any progeny or modifications will be conducted in compliance with all applicable laws, regulations, and guidelines. This product is provided 'AS IS' with no representations or warranties whatsoever except as expressly set forth herein and in no event shall ATCC, its parents, subsidiaries, directors, officers, agents, employees, assigns, successors, and affiliates be liable for indirect, special, incidental, or consequential damages of any kind in connection with or arising out of the customer's use of the product. While reasonable effort is made to ensure authenticity and reliability of materials on deposit, ATCC is not liable for damages arising from the misidentification or misrepresentation of such materials.

Please see the material transfer agreement (MTA) for further details regarding the use of this product. The MTA is available at www.atcc.org.

Permits & Restrictions

Import Permit for the State of Hawaii

If shipping to the U.S. state of Hawaii, you must provide either an import permit or documentation stating that an import permit is not required. We cannot ship this item until we receive this documentation. Contact the Hawaii Department of Agriculture (HDOA), Plant Industry Division, Plant Quarantine Branch to determine if an import permit is required.

MORE INFORMATION ABOUT PERMITS AND RESTRICTIONS

Frequently Asked Questions

References

Curated Citations

Moench TT, Zeikus JG. An improved preparation method for a titanium (III) media reductant. J. Microbiol. Methods. 1: 199-202, 1983.

He J, et al. Detoxification of vinyl chloride to ethene coupled to growth of an anaerobic bacterium. Nature 424: 62-65, 2003. PubMed: 12840758

Ritalahti KM, et al. Quantitative PCR targeting 16S rRNA and reductive dehalogenase genes simultaneously monitors multiple Dehalococcoides strains. Appl. Environ. Microbiol. 72(4): 2765-2774, 2006. PubMed: 16597981

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